Variant report

Variant	rs7590028
Chromosome Location	chr2:180549443-180549444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10208354	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1022311	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs10497544	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs11686166	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11901346	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12373725	0.85[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12622727	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs12623583	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13406795	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13419649	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13427033	0.94[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs1515281	0.83[JPT][hapmap]
rs1515282	0.83[JPT][hapmap]
rs1515287	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1515289	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16866903	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs16866915	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17820975	0.88[ASN][1000 genomes]
rs2292652	0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3106689	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3106725	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs3112968	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3112970	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs34714722	0.89[ASN][1000 genomes]
rs62175163	0.84[ASN][1000 genomes]
rs62175164	0.86[ASN][1000 genomes]
rs62175165	0.86[ASN][1000 genomes]
rs62177571	0.80[ASN][1000 genomes]
rs7421557	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7558364	0.94[CHB][hapmap];0.90[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs7558784	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7585817	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7585897	0.86[ASN][1000 genomes]
rs932113	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs932115	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs956261	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs9989898	0.96[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180544000-180557200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:180547400-180551600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180547600-180551200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links