Variant report

Variant	rs7558364
Chromosome Location	chr2:180516544-180516545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10208354	0.90[ASN][1000 genomes]
rs1022311	0.94[CHB][hapmap]
rs10497544	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11686166	0.89[ASN][1000 genomes]
rs11901346	0.94[CHB][hapmap];0.91[JPT][hapmap]
rs12373725	0.94[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs12622727	0.94[CHB][hapmap]
rs12623583	0.94[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs13406795	0.89[ASN][1000 genomes]
rs13419649	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs13427033	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1515287	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs1515289	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs16866903	0.94[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs16866915	0.94[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs17820975	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1877944	0.81[CEU][hapmap]
rs2292652	0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs3106689	0.94[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs3106725	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs3112968	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs3112970	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs34714722	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59743027	0.81[ASN][1000 genomes]
rs62175163	0.82[ASN][1000 genomes]
rs62177571	0.86[ASN][1000 genomes]
rs7421557	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs7558784	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs7585817	0.91[ASN][1000 genomes]
rs7590028	0.94[CHB][hapmap];0.90[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs932113	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs932115	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs956261	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9989898	0.93[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180508400-180517000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:180513000-180517000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180516400-180517400	Enhancers	Fetal Lung	lung

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