Variant report

Variant	rs2292652
Chromosome Location	chr2:180522559-180522560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLEKHA3-19	chr2:180522506-180522864	NONHSAT075833

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10208354	0.82[ASN][1000 genomes]
rs1022311	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs10497544	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs11686166	0.80[ASN][1000 genomes]
rs11901346	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12373725	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12622727	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12623583	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13406795	0.80[ASN][1000 genomes]
rs13419649	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13427033	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs1515281	0.82[JPT][hapmap]
rs1515282	0.84[JPT][hapmap]
rs1515287	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs1515289	0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs16866903	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866915	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17819172	1.00[YRI][hapmap]
rs17820975	0.86[ASN][1000 genomes]
rs3106689	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106725	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs3112968	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3112970	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34714722	0.86[ASN][1000 genomes]
rs58011887	0.85[ASN][1000 genomes]
rs59743027	0.88[ASN][1000 genomes]
rs61241001	0.80[ASN][1000 genomes]
rs62175163	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62175164	0.93[ASN][1000 genomes]
rs62175165	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62177571	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7421557	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7558364	0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs7558784	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7585817	0.82[ASN][1000 genomes]
rs7585897	0.93[ASN][1000 genomes]
rs7590028	0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs932113	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs932115	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs952507	0.84[CEU][hapmap]
rs956261	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9989898	0.84[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180521400-180523400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:180522400-180522600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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