Variant report

Variant	rs13419649
Chromosome Location	chr2:180540364-180540365
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10208354	0.95[ASN][1000 genomes]
rs1022311	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs10497544	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs11686166	0.94[ASN][1000 genomes]
rs11901346	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12373725	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12617158	0.82[CHB][hapmap]
rs12622727	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs12623583	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13406795	0.94[ASN][1000 genomes]
rs13427033	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs1515281	0.82[JPT][hapmap]
rs1515282	0.83[JPT][hapmap]
rs1515287	1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs1515289	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16866903	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16866915	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17820975	0.94[ASN][1000 genomes]
rs1877944	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs2292652	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3106689	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3106725	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs3112968	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3112970	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs34714722	0.95[ASN][1000 genomes]
rs62175163	0.87[ASN][1000 genomes]
rs62175164	0.85[ASN][1000 genomes]
rs62175165	0.85[ASN][1000 genomes]
rs62177571	0.86[ASN][1000 genomes]
rs7421557	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7558364	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs7558784	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7585817	0.96[ASN][1000 genomes]
rs7585897	0.85[ASN][1000 genomes]
rs7590028	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs932113	0.94[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs932115	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs956261	0.94[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs9989898	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180536200-180541600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:180536800-180541200	Weak transcription	HSMMtube	muscle
3	chr2:180537400-180542400	Weak transcription	Fetal Intestine Large	intestine
4	chr2:180540000-180540400	Enhancers	Liver	Liver
5	chr2:180540200-180540400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:180540200-180540400	Enhancers	Gastric	stomach
7	chr2:180540200-180540400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr2:180540200-180541200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr2:180540200-180541600	Enhancers	Fetal Heart	heart

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