Variant report

Variant	rs12622727
Chromosome Location	chr2:180555963-180555964
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1022311	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10497544	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11901346	1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[YRI][hapmap];0.84[ASN][1000 genomes]
rs12373725	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs12617158	1.00[CEU][hapmap]
rs12623583	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs13419649	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs13427033	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1515281	0.86[EUR][1000 genomes]
rs1515282	0.89[EUR][1000 genomes]
rs1515287	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1515289	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs16866903	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs16866915	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2292652	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs3106689	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs3106725	1.00[CHB][hapmap]
rs3112968	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs3112970	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs58011887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59743027	0.83[ASN][1000 genomes]
rs61241001	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62175160	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62175161	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62175162	1.00[EUR][1000 genomes]
rs62175163	0.83[ASN][1000 genomes]
rs62175164	0.82[ASN][1000 genomes]
rs62175165	0.82[ASN][1000 genomes]
rs62175169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175183	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175187	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7421557	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7558364	0.94[CHB][hapmap]
rs7558784	0.94[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs7585897	0.82[ASN][1000 genomes]
rs7590028	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs932113	1.00[CHB][hapmap]
rs932115	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs956261	1.00[CHB][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180544000-180557200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:180552400-180566400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180552600-180556800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:180552800-180557400	Weak transcription	NHDF-Ad	bronchial
6	chr2:180553600-180558600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:180555400-180557800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr2:180555600-180557600	Enhancers	NHLF	lung
9	chr2:180555600-180557800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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