Variant report

Variant	rs62175162
Chromosome Location	chr2:180538029-180538030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12622727	1.00[EUR][1000 genomes]
rs1515281	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1515282	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3106689	0.80[AFR][1000 genomes]
rs58011887	1.00[EUR][1000 genomes]
rs61241001	1.00[EUR][1000 genomes]
rs62175160	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62175161	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62175169	1.00[EUR][1000 genomes]
rs62175183	1.00[EUR][1000 genomes]
rs62175184	1.00[EUR][1000 genomes]
rs62175187	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180535200-180540200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180536200-180541600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:180536800-180539400	Weak transcription	Gastric	stomach
4	chr2:180536800-180541200	Weak transcription	HSMMtube	muscle
5	chr2:180537400-180542400	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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