Variant report

Variant	rs908287
Chromosome Location	chr2:180445308-180445309
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:180445086..180446084-chr2:180511232..180512253,14	MCF-7	breast:
2	chr2:180441137..180442663-chr2:180445038..180447990,2	K562	blood:
3	chr2:180445162..180446091-chr2:180511317..180512194,3	MCF-7	breast:
4	chr2:180445086..180446209-chr2:180511232..180512253,24	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10048645	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs10189196	0.93[ASN][1000 genomes]
rs10189808	0.83[ASN][1000 genomes]
rs10497542	0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs11885342	0.87[ASN][1000 genomes]
rs12622221	0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12693196	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs12991282	0.83[ASN][1000 genomes]
rs13000199	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs13001067	0.85[ASN][1000 genomes]
rs13026689	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs13411084	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs13411180	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs1515306	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs1515310	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs1515313	0.85[ASN][1000 genomes]
rs1515314	0.85[ASN][1000 genomes]
rs16866810	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs16866814	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs16866815	0.85[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs16866822	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16866832	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs16866838	0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs16866842	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16866850	0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17818050	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs2176061	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs2222031	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs2887110	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs3106713	0.81[CHB][hapmap]
rs3106714	0.85[CHB][hapmap]
rs61432525	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73039384	0.89[ASN][1000 genomes]
rs7425514	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs7593595	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs7608224	0.84[JPT][hapmap]
rs969231	0.83[ASN][1000 genomes]
rs988289	0.83[ASN][1000 genomes]
rs988290	0.85[CHB][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180433000-180445600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:180435400-180446400	Weak transcription	Fetal Kidney	kidney
4	chr2:180439800-180446400	Enhancers	Liver	Liver
5	chr2:180442400-180446800	Enhancers	HepG2	liver
6	chr2:180444200-180445800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:180444600-180445800	Enhancers	Fetal Intestine Small	intestine
8	chr2:180444800-180445800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr2:180445000-180445600	Enhancers	Fetal Intestine Large	intestine
10	chr2:180445000-180445600	Enhancers	Stomach Mucosa	stomach
11	chr2:180445000-180445600	Enhancers	A549	lung
12	chr2:180445000-180446200	Enhancers	Fetal Heart	heart
13	chr2:180445200-180445400	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr2:180445200-180445600	Enhancers	Fetal Muscle Leg	muscle
15	chr2:180445200-180445600	Enhancers	Right Atrium	heart
16	chr2:180445200-180445800	Enhancers	Fetal Lung	lung
17	chr2:180445200-180445800	Enhancers	Pancreas	Pancrea
18	chr2:180445200-180446000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:180445200-180450600	Enhancers	Skeletal Muscle Male	skeletal muscle

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