Variant report

Variant	rs1533385
Chromosome Location	chr2:180460930-180460931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10048645	0.81[JPT][hapmap]
rs10169561	0.81[JPT][hapmap]
rs11687634	0.85[JPT][hapmap]
rs11692794	0.81[JPT][hapmap]
rs12693196	0.81[JPT][hapmap]
rs12693197	0.81[JPT][hapmap]
rs13000199	0.81[JPT][hapmap]
rs13012946	0.80[JPT][hapmap]
rs13026689	0.81[JPT][hapmap]
rs13035781	0.85[JPT][hapmap]
rs13411084	0.81[JPT][hapmap]
rs13411180	0.81[JPT][hapmap]
rs1515315	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1515317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1554101	0.85[JPT][hapmap]
rs1606816	0.85[JPT][hapmap]
rs16866810	0.81[JPT][hapmap]
rs16866832	0.81[JPT][hapmap]
rs16866857	0.85[JPT][hapmap]
rs1877943	0.85[JPT][hapmap]
rs2090219	0.91[LWK][hapmap];0.88[YRI][hapmap]
rs2138195	0.85[JPT][hapmap]
rs2222031	0.86[JPT][hapmap]
rs2887110	0.81[JPT][hapmap]
rs3106704	0.96[YRI][hapmap]
rs3106705	0.80[AFR][1000 genomes]
rs3106710	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3106712	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106713	0.91[GIH][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes]
rs3106714	0.91[GIH][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes]
rs3112959	0.92[YRI][hapmap]
rs3112964	0.92[YRI][hapmap]
rs3112969	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs4511690	0.81[JPT][hapmap]
rs4894115	0.85[JPT][hapmap]
rs6707527	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6717795	0.85[JPT][hapmap]
rs7425514	0.84[JPT][hapmap]
rs7558351	0.85[JPT][hapmap]
rs7593595	0.81[JPT][hapmap]
rs7601398	0.90[JPT][hapmap]
rs872158	0.85[JPT][hapmap]
rs872159	0.85[JPT][hapmap]
rs872160	0.85[JPT][hapmap]
rs951425	0.84[JPT][hapmap]
rs979901	0.86[JPT][hapmap]
rs988290	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875471	chr2:180448523-180469778	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180459200-180461400	Enhancers	Osteobl	bone
3	chr2:180459800-180461200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:180460000-180461600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:180460600-180461200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:180460600-180461600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:180460800-180461400	Enhancers	NHEK	skin
8	chr2:180460800-180463200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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