Variant report

Variant	rs3106704
Chromosome Location	chr2:180486040-180486041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180473666..180476592-chr2:180484844..180487582,2	K562	blood:
2	chr2:180476329..180478000-chr2:180485125..180487896,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13391446	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1515275	1.00[JPT][hapmap]
rs1515315	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1515317	0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs1533385	0.96[YRI][hapmap]
rs1588847	1.00[JPT][hapmap]
rs1588849	1.00[JPT][hapmap]
rs1588850	1.00[JPT][hapmap]
rs16866864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2090219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3106703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3106705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3106706	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3106712	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs3106713	0.87[YRI][hapmap]
rs3106714	0.87[YRI][hapmap]
rs3112939	0.89[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs3112940	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3112945	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3112954	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3112955	1.00[JPT][hapmap]
rs3112958	0.96[ASN][1000 genomes]
rs3112959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3112962	1.00[JPT][hapmap]
rs3112964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3112969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6710552	0.88[ASN][1000 genomes]
rs6713726	0.93[ASN][1000 genomes]
rs9753151	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
2	chr2:180478800-180488200	Weak transcription	Lung	lung
3	chr2:180479000-180487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180483400-180486400	Weak transcription	Fetal Heart	heart
5	chr2:180484000-180487200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:180486000-180494600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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