Variant report

Variant	rs3112945
Chromosome Location	chr2:180501314-180501315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10497546	0.84[MEX][hapmap]
rs11903667	0.84[MEX][hapmap]
rs13391446	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1515275	1.00[JPT][hapmap]
rs1588847	1.00[JPT][hapmap]
rs1588849	1.00[JPT][hapmap]
rs1588850	1.00[JPT][hapmap]
rs16866864	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.96[ASN][1000 genomes]
rs2090219	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3106703	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3106704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3106705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3106706	0.92[ASN][1000 genomes]
rs3112939	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3112940	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3112954	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3112955	1.00[JPT][hapmap]
rs3112958	0.97[ASN][1000 genomes]
rs3112959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3112962	1.00[JPT][hapmap]
rs3112964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3112969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6710552	0.89[ASN][1000 genomes]
rs6713726	0.92[ASN][1000 genomes]
rs9753151	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180495000-180502200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180500800-180501600	Enhancers	Fetal Kidney	kidney
3	chr2:180500800-180501600	Flanking Active TSS	HepG2	liver
4	chr2:180500800-180502400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:180500800-180502400	Enhancers	Liver	Liver
6	chr2:180501000-180501400	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr2:180501000-180501400	Enhancers	Fetal Muscle Leg	muscle
8	chr2:180501000-180501400	Enhancers	Left Ventricle	heart
9	chr2:180501000-180502000	Enhancers	Ovary	ovary
10	chr2:180501000-180502400	Enhancers	Fetal Lung	lung
11	chr2:180501000-180502400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr2:180501000-180502400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr2:180501000-180502600	Enhancers	HSMMtube	muscle
14	chr2:180501200-180501600	Flanking Active TSS	Fetal Heart	heart
15	chr2:180501200-180502000	Enhancers	Colon Smooth Muscle	Colon
16	chr2:180501200-180502200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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