Variant report

Variant	rs3112969
Chromosome Location	chr2:180478989-180478990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180477852..180480440-chr2:180482454..180484640,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13391446	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1515275	1.00[JPT][hapmap]
rs1515315	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1515317	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs1533385	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs1588847	1.00[JPT][hapmap]
rs1588849	1.00[JPT][hapmap]
rs1588850	1.00[JPT][hapmap]
rs16866864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2090219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3106703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3106704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3106705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106706	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3106712	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs3106713	0.87[YRI][hapmap]
rs3106714	0.87[YRI][hapmap]
rs3112939	0.89[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs3112940	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3112945	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3112954	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3112955	1.00[JPT][hapmap]
rs3112958	0.95[ASN][1000 genomes]
rs3112959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3112962	1.00[JPT][hapmap]
rs3112964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6710552	0.86[ASN][1000 genomes]
rs6713726	0.92[ASN][1000 genomes]
rs9753151	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180476600-180479400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:180476600-180479600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:180476600-180479600	Enhancers	Osteobl	bone
4	chr2:180476800-180479200	Enhancers	Fetal Heart	heart
5	chr2:180477000-180479000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:180477200-180479000	Enhancers	Rectal Smooth Muscle	rectum
7	chr2:180477200-180479800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:180477200-180480000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr2:180477200-180480000	Enhancers	NHLF	lung
10	chr2:180477400-180479000	Enhancers	Placenta	Placenta
11	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
12	chr2:180477800-180484200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr2:180478000-180483000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr2:180478200-180479200	Flanking Active TSS	NHEK	skin
15	chr2:180478200-180479400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:180478200-180479600	Enhancers	HSMM	muscle
17	chr2:180478400-180479000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:180478400-180479000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:180478400-180479400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr2:180478800-180479000	Weak transcription	Aorta	Aorta
21	chr2:180478800-180479600	Enhancers	Fetal Lung	lung
22	chr2:180478800-180479800	Enhancers	HSMMtube	muscle
23	chr2:180478800-180481200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:180478800-180488200	Weak transcription	Lung	lung

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