Variant report

Variant	rs3106705
Chromosome Location	chr2:180482033-180482034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13391446	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1515275	1.00[JPT][hapmap]
rs1515315	0.84[AFR][1000 genomes]
rs1515317	0.88[AFR][1000 genomes]
rs1533385	0.80[AFR][1000 genomes]
rs1588847	1.00[JPT][hapmap]
rs1588849	1.00[JPT][hapmap]
rs1588850	1.00[JPT][hapmap]
rs16866864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2090219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3106703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3106704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3106706	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3106712	0.83[AFR][1000 genomes]
rs3112939	0.88[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs3112940	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3112945	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3112954	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3112955	1.00[JPT][hapmap]
rs3112958	0.95[ASN][1000 genomes]
rs3112959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3112962	1.00[JPT][hapmap]
rs3112964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3112969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6710552	0.86[ASN][1000 genomes]
rs6713726	0.92[ASN][1000 genomes]
rs9753151	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
2	chr2:180477800-180484200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:180478000-180483000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:180478800-180488200	Weak transcription	Lung	lung
5	chr2:180479000-180487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:180479600-180483400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:180479600-180483600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:180480000-180483400	Weak transcription	NHEK	skin

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