Variant report

Variant	rs3112939
Chromosome Location	chr2:180504672-180504673
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10168158	0.86[AMR][1000 genomes]
rs10497546	0.86[AMR][1000 genomes]
rs12465360	0.86[AMR][1000 genomes]
rs13391446	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515275	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1554105	0.86[AMR][1000 genomes]
rs1588847	0.91[JPT][hapmap]
rs1588849	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1588850	0.91[JPT][hapmap]
rs16866864	0.88[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2090219	0.88[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs3106703	0.88[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs3106704	0.89[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs3106705	0.88[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs3106706	0.82[ASN][1000 genomes]
rs3112940	0.90[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.93[ASN][1000 genomes]
rs3112945	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3112954	0.88[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs3112955	0.91[JPT][hapmap]
rs3112958	0.87[ASN][1000 genomes]
rs3112959	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3112962	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs3112964	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3112969	0.89[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6433801	0.84[AMR][1000 genomes]
rs6713726	0.82[ASN][1000 genomes]
rs6760409	0.80[AMR][1000 genomes]
rs7569504	0.86[AMR][1000 genomes]
rs9753151	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180502200-180510200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:180502400-180509600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180502400-180511600	Weak transcription	Fetal Heart	heart

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