Variant report

Variant	rs6760409
Chromosome Location	chr2:180519118-180519119
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10167651	0.82[EUR][1000 genomes]
rs10168158	0.90[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10178197	0.92[ASN][1000 genomes]
rs10187687	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10190718	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10201348	1.00[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs10497546	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10497547	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11889892	0.93[ASN][1000 genomes]
rs11897834	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11903667	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12463735	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs12465360	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12477618	0.96[ASN][1000 genomes]
rs12693203	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs12693204	0.88[CHB][hapmap]
rs13412593	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1399690	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs1515285	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1515293	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1554105	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1606817	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs16866924	0.88[ASN][1000 genomes]
rs16866929	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs2276572	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs28469228	0.89[ASN][1000 genomes]
rs28615198	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3112939	0.80[AMR][1000 genomes]
rs6433801	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6708429	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs6708458	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs6730056	0.91[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72958954	0.88[ASN][1000 genomes]
rs72958970	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72958973	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7557526	0.81[ASN][1000 genomes]
rs7566865	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap]
rs7569504	0.91[CEU][hapmap];0.89[CHB][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7569621	1.00[CHB][hapmap];0.89[JPT][hapmap];0.99[ASN][1000 genomes]
rs7570893	0.91[CEU][hapmap];0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs7581866	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7607628	1.00[CHB][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180517400-180521400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:180518400-180519400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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