Variant report

Variant	rs7569504
Chromosome Location	chr2:180519429-180519430
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10167651	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10168158	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10178197	0.92[ASN][1000 genomes]
rs10187687	0.89[CHB][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10190718	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10201348	0.88[CHB][hapmap];0.92[ASN][1000 genomes]
rs10497546	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10497547	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11889892	0.93[ASN][1000 genomes]
rs11897834	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11903667	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12463735	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12465360	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12477618	0.96[ASN][1000 genomes]
rs13391446	0.84[AMR][1000 genomes]
rs13412593	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1399690	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1515285	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1515293	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1554105	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1606817	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16866924	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16866929	1.00[CEU][hapmap];0.88[CHB][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2276572	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs28469228	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28615198	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3112939	0.86[AMR][1000 genomes]
rs6433801	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6708429	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs6708458	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs6730056	1.00[CEU][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6760409	0.91[CEU][hapmap];0.89[CHB][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72958954	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72958970	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72958973	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7557526	0.81[ASN][1000 genomes]
rs7566865	1.00[CHB][hapmap]
rs7569621	0.88[CHB][hapmap];0.99[ASN][1000 genomes]
rs7570893	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7581866	0.88[CHB][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7607628	0.88[CHB][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180517400-180521400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:180519400-180520600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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