Variant report

Variant	rs7569621
Chromosome Location	chr2:180519556-180519557
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10168158	1.00[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs10178197	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10187687	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10190718	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10201348	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10497546	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10497547	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs11889789	0.82[CEU][hapmap]
rs11889892	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11897834	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11903667	1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12463735	1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.87[ASN][1000 genomes]
rs12465360	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12477618	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12693203	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs12693204	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs13412593	0.96[ASN][1000 genomes]
rs1399690	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1515285	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1515293	1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.89[ASN][1000 genomes]
rs1554105	0.99[ASN][1000 genomes]
rs1606817	1.00[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];0.89[ASN][1000 genomes]
rs16866924	0.89[ASN][1000 genomes]
rs16866929	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2090219	0.80[MEX][hapmap]
rs2276572	1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap]
rs28469228	0.90[ASN][1000 genomes]
rs28615198	0.88[ASN][1000 genomes]
rs6433801	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs6708189	0.90[TSI][hapmap]
rs6708429	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6708458	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6730056	0.88[CHB][hapmap];0.87[ASN][1000 genomes]
rs6751130	0.89[JPT][hapmap]
rs6760409	1.00[CHB][hapmap];0.89[JPT][hapmap];0.99[ASN][1000 genomes]
rs72958954	0.89[ASN][1000 genomes]
rs72958970	0.89[ASN][1000 genomes]
rs72958973	0.89[ASN][1000 genomes]
rs7557526	0.82[ASN][1000 genomes]
rs7566865	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7569504	0.88[CHB][hapmap];0.99[ASN][1000 genomes]
rs7570893	0.88[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.87[ASN][1000 genomes]
rs7581866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7607628	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180517400-180521400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:180519400-180520600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links