Variant report

Variant	rs12693203
Chromosome Location	chr2:180553494-180553495
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10168158	0.88[CHB][hapmap]
rs10187687	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs10190718	0.89[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10201348	0.88[CHB][hapmap]
rs10497546	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs10497547	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11897834	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs11903667	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs12463735	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs12465360	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs12693204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1399690	0.89[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1515285	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs1515293	0.88[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs1606817	0.86[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs16866924	0.84[ASN][1000 genomes]
rs16866929	0.88[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2276572	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs28469228	0.83[ASN][1000 genomes]
rs6433801	0.89[CHB][hapmap]
rs6708429	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs6708458	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs6730056	0.89[JPT][hapmap]
rs6751130	0.88[CHB][hapmap];0.87[ASN][1000 genomes]
rs6760409	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs72958954	0.81[ASN][1000 genomes]
rs72958970	0.81[ASN][1000 genomes]
rs72958973	0.81[ASN][1000 genomes]
rs7566865	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs7569621	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs7570893	0.89[JPT][hapmap]
rs7581866	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs7607628	0.88[CHB][hapmap]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180544000-180557200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:180552400-180555400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:180552400-180566400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:180552600-180556800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:180552800-180557400	Weak transcription	NHDF-Ad	bronchial
7	chr2:180553400-180553600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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