Variant report

Variant	rs2090219
Chromosome Location	chr2:180477612-180477613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180476329..180478000-chr2:180485125..180487896,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13391446	0.95[ASN][1000 genomes]
rs1515275	1.00[JPT][hapmap]
rs1515315	0.84[YRI][hapmap]
rs1515317	0.88[YRI][hapmap]
rs1533385	0.91[LWK][hapmap];0.88[YRI][hapmap]
rs1588847	1.00[JPT][hapmap]
rs1588849	1.00[JPT][hapmap]
rs1588850	1.00[JPT][hapmap]
rs16866864	1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3106703	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3106704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3106705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3106706	1.00[ASN][1000 genomes]
rs3106712	0.84[YRI][hapmap]
rs3112939	0.88[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs3112940	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3112945	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3112954	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3112955	1.00[JPT][hapmap]
rs3112958	0.95[ASN][1000 genomes]
rs3112959	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.92[ASN][1000 genomes]
rs3112962	1.00[JPT][hapmap]
rs3112964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.95[ASN][1000 genomes]
rs3112969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6710552	0.86[ASN][1000 genomes]
rs6713726	0.92[ASN][1000 genomes]
rs7569621	0.80[MEX][hapmap]
rs7607628	0.86[MEX][hapmap]
rs9753151	0.90[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180473600-180478400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:180476600-180479400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:180476600-180479600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:180476600-180479600	Enhancers	Osteobl	bone
5	chr2:180476800-180477800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:180476800-180477800	Enhancers	Fetal Lung	lung
7	chr2:180476800-180479200	Enhancers	Fetal Heart	heart
8	chr2:180477000-180477800	Enhancers	Colon Smooth Muscle	Colon
9	chr2:180477000-180478200	Enhancers	NHEK	skin
10	chr2:180477000-180478800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:180477000-180478800	Enhancers	Adipose Nuclei	Adipose
12	chr2:180477000-180478800	Enhancers	Ovary	ovary
13	chr2:180477000-180479000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:180477200-180477800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr2:180477200-180477800	Enhancers	Aorta	Aorta
16	chr2:180477200-180478000	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr2:180477200-180478000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr2:180477200-180478400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:180477200-180478800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:180477200-180478800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr2:180477200-180478800	Enhancers	Lung	lung
22	chr2:180477200-180478800	Enhancers	Right Atrium	heart
23	chr2:180477200-180479000	Enhancers	Rectal Smooth Muscle	rectum
24	chr2:180477200-180479800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:180477200-180480000	Enhancers	Placenta Amnion	Placenta Amnion
26	chr2:180477200-180480000	Enhancers	NHLF	lung
27	chr2:180477400-180477800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr2:180477400-180477800	Enhancers	HSMM	muscle
29	chr2:180477400-180479000	Enhancers	Placenta	Placenta
30	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
31	chr2:180477600-180478800	Weak transcription	HSMMtube	muscle

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