Variant report

Variant	rs3112959
Chromosome Location	chr2:180492678-180492679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10497546	0.92[MEX][hapmap]
rs11903667	0.92[MEX][hapmap]
rs13391446	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1515275	1.00[JPT][hapmap]
rs1515293	0.84[MEX][hapmap]
rs1515315	0.96[YRI][hapmap]
rs1515317	0.92[YRI][hapmap]
rs1533385	0.92[YRI][hapmap]
rs1588847	1.00[JPT][hapmap]
rs1588849	1.00[JPT][hapmap]
rs1588850	1.00[JPT][hapmap]
rs16866864	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.96[ASN][1000 genomes]
rs2090219	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.92[ASN][1000 genomes]
rs3106703	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3106704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3106705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3106706	0.92[ASN][1000 genomes]
rs3106712	0.96[YRI][hapmap]
rs3106713	0.91[LWK][hapmap];0.83[YRI][hapmap]
rs3106714	0.88[LWK][hapmap];0.83[YRI][hapmap]
rs3112939	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3112940	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3112945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3112954	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3112955	1.00[JPT][hapmap]
rs3112958	0.97[ASN][1000 genomes]
rs3112962	1.00[JPT][hapmap]
rs3112964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3112969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6710552	0.89[ASN][1000 genomes]
rs6713726	0.92[ASN][1000 genomes]
rs9753151	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180486000-180494600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:180488400-180494600	Weak transcription	Lung	lung
3	chr2:180489600-180500800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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