Variant report

Variant	rs6710552
Chromosome Location	chr2:180496422-180496423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13391446	0.92[ASN][1000 genomes]
rs16866864	0.91[ASN][1000 genomes]
rs2090219	0.86[ASN][1000 genomes]
rs3106703	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3106704	0.88[ASN][1000 genomes]
rs3106705	0.86[ASN][1000 genomes]
rs3106706	0.86[ASN][1000 genomes]
rs3112940	0.83[ASN][1000 genomes]
rs3112945	0.89[ASN][1000 genomes]
rs3112950	0.83[AFR][1000 genomes]
rs3112954	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3112958	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3112959	0.89[ASN][1000 genomes]
rs3112964	0.92[ASN][1000 genomes]
rs3112969	0.86[ASN][1000 genomes]
rs6713726	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7420500	0.85[AFR][1000 genomes]
rs9753151	0.88[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180489600-180500800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr2:180495000-180502200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:180496200-180497400	Enhancers	Liver	Liver
4	chr2:180496400-180497000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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