Variant report

Variant	rs3106703
Chromosome Location	chr2:180491521-180491522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12476862	0.84[AFR][1000 genomes]
rs13391446	1.00[ASN][1000 genomes]
rs1515275	1.00[JPT][hapmap];0.89[AFR][1000 genomes]
rs1588847	0.94[ASW][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs1588849	1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs1588850	0.94[ASW][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs16866864	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2090219	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2367892	0.90[AFR][1000 genomes]
rs2367893	0.90[AFR][1000 genomes]
rs3106702	0.86[AFR][1000 genomes]
rs3106704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3106705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3106706	0.95[ASN][1000 genomes]
rs3112939	0.88[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs3112940	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3112945	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3112951	0.86[AFR][1000 genomes]
rs3112952	0.88[AFR][1000 genomes]
rs3112954	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3112955	0.94[ASW][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.86[MKK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs3112958	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3112959	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3112962	1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs3112964	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3112966	0.87[AFR][1000 genomes]
rs3112969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6710552	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6713726	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6713950	0.88[AFR][1000 genomes]
rs6755020	0.81[AFR][1000 genomes]
rs9750028	0.86[AFR][1000 genomes]
rs9751216	0.84[AFR][1000 genomes]
rs9752925	0.86[AFR][1000 genomes]
rs9753151	0.96[ASN][1000 genomes]
rs9753170	0.83[AFR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180486000-180494600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:180488400-180494600	Weak transcription	Lung	lung
3	chr2:180489600-180500800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180490800-180492600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:180491200-180492400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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