Variant report

Variant	rs6728581
Chromosome Location	chr2:180472194-180472195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10048645	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10169561	0.92[ASN][1000 genomes]
rs10189808	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1115013	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11687634	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11692794	0.92[ASN][1000 genomes]
rs11889907	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12693196	0.85[ASN][1000 genomes]
rs12693197	0.94[ASN][1000 genomes]
rs12991282	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13000027	0.92[ASN][1000 genomes]
rs13000199	0.83[ASN][1000 genomes]
rs13001067	0.83[ASN][1000 genomes]
rs13012946	0.92[ASN][1000 genomes]
rs13021168	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13022986	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13026689	0.83[ASN][1000 genomes]
rs13411084	0.83[ASN][1000 genomes]
rs13411180	0.83[ASN][1000 genomes]
rs1515313	0.83[ASN][1000 genomes]
rs1515314	0.83[ASN][1000 genomes]
rs1554101	0.83[ASN][1000 genomes]
rs1581175	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1606814	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1606816	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16866832	0.83[ASN][1000 genomes]
rs1877943	0.83[ASN][1000 genomes]
rs2138195	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2176061	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2222031	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2887110	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4511690	0.90[ASN][1000 genomes]
rs4894113	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4894115	0.83[ASN][1000 genomes]
rs56219418	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6717795	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7425514	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7558351	0.83[ASN][1000 genomes]
rs7593595	0.83[ASN][1000 genomes]
rs872158	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs872159	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs872160	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs951425	0.83[ASN][1000 genomes]
rs951426	0.83[ASN][1000 genomes]
rs969231	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs979901	0.94[ASN][1000 genomes]
rs988288	0.94[ASN][1000 genomes]
rs988289	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs988290	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180471000-180476800	Weak transcription	Fetal Lung	lung
2	chr2:180471200-180473000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:180471200-180477200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:180471800-180474600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:180472000-180477000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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