Variant report

Variant	rs1515304
Chromosome Location	chr2:180439621-180439622
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180438670..180439638-chr2:180510962..180512189,4	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10048645	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10179050	0.82[JPT][hapmap]
rs10189196	0.87[EUR][1000 genomes]
rs10189808	0.81[EUR][1000 genomes]
rs10191369	0.82[JPT][hapmap]
rs11674582	1.00[CEU][hapmap]
rs11683510	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11695089	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693195	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693196	1.00[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs12986652	1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12991282	0.81[EUR][1000 genomes]
rs12991713	1.00[CEU][hapmap]
rs13000199	1.00[CEU][hapmap]
rs13001067	0.81[EUR][1000 genomes]
rs13009601	0.87[TSI][hapmap]
rs13014868	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13026689	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13028216	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13029050	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515274	0.83[TSI][hapmap]
rs1515305	1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs1515311	0.82[JPT][hapmap]
rs1515312	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515313	0.81[EUR][1000 genomes]
rs1515314	0.81[EUR][1000 genomes]
rs1606813	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866810	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16866819	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866823	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866832	1.00[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs16866834	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866857	1.00[CEU][hapmap]
rs16866863	1.00[CHD][hapmap]
rs2176061	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2222031	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2887110	1.00[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs3106716	0.82[JPT][hapmap]
rs3112976	0.82[JPT][hapmap]
rs34313722	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376589	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34545498	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35439427	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35664499	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62176093	1.00[ASN][1000 genomes]
rs6721295	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71425640	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73973307	0.90[EUR][1000 genomes]
rs7581924	1.00[CEU][hapmap];0.95[TSI][hapmap]
rs7592221	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7593595	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7601398	1.00[CEU][hapmap]
rs7604253	1.00[JPT][hapmap]
rs9288040	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951427	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs969231	0.81[EUR][1000 genomes]
rs988289	0.81[EUR][1000 genomes]
rs988290	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521639	chr2:180439541-180443444	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180433000-180440800	Weak transcription	Gastric	stomach
2	chr2:180433000-180445600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:180435400-180446400	Weak transcription	Fetal Kidney	kidney
5	chr2:180437600-180445200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:180438400-180439800	Flanking Active TSS	Liver	Liver
7	chr2:180438600-180439800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:180438600-180439800	Enhancers	Osteobl	bone
9	chr2:180438800-180439800	Enhancers	Fetal Lung	lung
10	chr2:180439000-180441000	Enhancers	HepG2	liver
11	chr2:180439400-180443200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:180439400-180445000	Weak transcription	Stomach Mucosa	stomach
13	chr2:180439600-180439800	Enhancers	Fetal Intestine Large	intestine
14	chr2:180439600-180443000	Weak transcription	Rectal Mucosa Donor 31	rectum

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