Variant report

Variant	rs1606813
Chromosome Location	chr2:180476976-180476977
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180476329..180478000-chr2:180485125..180487896,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10048645	0.90[EUR][1000 genomes]
rs10189196	0.84[EUR][1000 genomes]
rs10189808	0.90[EUR][1000 genomes]
rs11683510	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11695089	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12615265	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12615343	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12693195	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693196	0.90[EUR][1000 genomes]
rs12986652	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12987486	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12991282	0.90[EUR][1000 genomes]
rs13000199	0.89[EUR][1000 genomes]
rs13001067	0.90[EUR][1000 genomes]
rs13014868	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13026689	0.90[EUR][1000 genomes]
rs13028216	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13029050	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515304	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515312	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515313	0.90[EUR][1000 genomes]
rs1515314	0.90[EUR][1000 genomes]
rs16866810	0.84[EUR][1000 genomes]
rs16866819	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866823	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866832	0.90[EUR][1000 genomes]
rs16866834	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866857	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2176061	0.90[EUR][1000 genomes]
rs2222031	0.90[EUR][1000 genomes]
rs2887110	0.90[EUR][1000 genomes]
rs34313722	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376589	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34528783	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34545498	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663462	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35439427	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35664499	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36060902	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62176093	1.00[ASN][1000 genomes]
rs6721295	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71425640	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73973307	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7581924	0.87[EUR][1000 genomes]
rs7592221	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7593595	0.90[EUR][1000 genomes]
rs7601398	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9288040	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951427	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs969231	0.90[EUR][1000 genomes]
rs988289	0.90[EUR][1000 genomes]
rs988290	0.87[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180471200-180477200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:180472000-180477000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180473600-180478400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:180474200-180477000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:180474200-180477200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:180476600-180479400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:180476600-180479600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:180476600-180479600	Enhancers	Osteobl	bone
9	chr2:180476800-180477800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:180476800-180477800	Enhancers	Fetal Lung	lung
11	chr2:180476800-180479200	Enhancers	Fetal Heart	heart

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