Variant report

Variant	rs71425640
Chromosome Location	chr2:180494727-180494728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10048645	0.89[EUR][1000 genomes]
rs10189196	0.83[EUR][1000 genomes]
rs10189808	0.89[EUR][1000 genomes]
rs11683510	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11695089	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12615265	0.87[EUR][1000 genomes]
rs12615343	0.87[EUR][1000 genomes]
rs12693195	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12693196	0.89[EUR][1000 genomes]
rs12986652	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12987486	0.87[EUR][1000 genomes]
rs12991282	0.89[EUR][1000 genomes]
rs13000199	0.87[EUR][1000 genomes]
rs13001067	0.89[EUR][1000 genomes]
rs13014868	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13026689	0.89[EUR][1000 genomes]
rs13028216	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13029050	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515304	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515312	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515313	0.89[EUR][1000 genomes]
rs1515314	0.89[EUR][1000 genomes]
rs1606813	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866810	0.83[EUR][1000 genomes]
rs16866819	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866823	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866832	0.89[EUR][1000 genomes]
rs16866834	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866857	0.87[EUR][1000 genomes]
rs2176061	0.89[EUR][1000 genomes]
rs2222031	0.89[EUR][1000 genomes]
rs2887110	0.89[EUR][1000 genomes]
rs34313722	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34376589	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34528783	0.87[EUR][1000 genomes]
rs34545498	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34663462	0.86[EUR][1000 genomes]
rs35439427	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35664499	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36060902	0.87[EUR][1000 genomes]
rs62176093	0.87[ASN][1000 genomes]
rs6721295	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73973307	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7581924	0.85[EUR][1000 genomes]
rs7592221	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7593595	0.89[EUR][1000 genomes]
rs7601398	0.87[EUR][1000 genomes]
rs9288040	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs951427	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969231	0.89[EUR][1000 genomes]
rs988289	0.89[EUR][1000 genomes]
rs988290	0.86[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180489600-180500800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr2:180494400-180494800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:180494400-180494800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:180494400-180495000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:180494400-180495000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:180494400-180495000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:180494400-180495200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:180494400-180495200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr2:180494600-180495000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:180494600-180495000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:180494600-180495200	Enhancers	Lung	lung

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