Variant report

Variant	rs1515312
Chromosome Location	chr2:180446977-180446978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180441137..180442663-chr2:180445038..180447990,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10048645	0.81[EUR][1000 genomes]
rs10189196	0.87[EUR][1000 genomes]
rs10189808	0.81[EUR][1000 genomes]
rs11683510	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11695089	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693195	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693196	0.81[EUR][1000 genomes]
rs12986652	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12991282	0.81[EUR][1000 genomes]
rs13001067	0.81[EUR][1000 genomes]
rs13014868	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13026689	0.81[EUR][1000 genomes]
rs13028216	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13029050	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515304	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515313	0.81[EUR][1000 genomes]
rs1515314	0.81[EUR][1000 genomes]
rs1606813	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866810	0.87[EUR][1000 genomes]
rs16866819	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866823	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866832	0.81[EUR][1000 genomes]
rs16866834	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2176061	0.81[EUR][1000 genomes]
rs2222031	0.81[EUR][1000 genomes]
rs2887110	0.81[EUR][1000 genomes]
rs34313722	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376589	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34545498	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35439427	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35664499	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62176093	1.00[ASN][1000 genomes]
rs6721295	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71425640	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73973307	0.90[EUR][1000 genomes]
rs7592221	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7593595	0.81[EUR][1000 genomes]
rs9288040	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951427	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs969231	0.81[EUR][1000 genomes]
rs988289	0.81[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180445200-180450600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr2:180445600-180449400	Weak transcription	Right Atrium	heart
4	chr2:180445800-180449200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:180445800-180449200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:180445800-180449200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr2:180446000-180449200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:180446200-180449200	Weak transcription	Fetal Heart	heart
9	chr2:180446400-180449200	Weak transcription	Liver	Liver
10	chr2:180446800-180449200	Weak transcription	HepG2	liver

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