Variant report

Variant	rs1533387
Chromosome Location	chr2:180466660-180466661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180466180..180468206-chr2:180468630..180471085,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10048645	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10189196	0.84[ASN][1000 genomes]
rs10189808	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12615265	0.83[ASN][1000 genomes]
rs12615343	0.83[ASN][1000 genomes]
rs12693196	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12987486	0.83[ASN][1000 genomes]
rs12991282	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13000199	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13001067	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13026689	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13411084	0.91[ASN][1000 genomes]
rs13411180	0.91[ASN][1000 genomes]
rs1515313	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1515314	0.91[ASN][1000 genomes]
rs16866810	0.84[ASN][1000 genomes]
rs16866822	0.84[ASN][1000 genomes]
rs16866832	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16866842	0.86[ASN][1000 genomes]
rs16866850	0.86[ASN][1000 genomes]
rs16866857	0.83[ASN][1000 genomes]
rs2176061	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2222031	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2887110	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34528783	0.83[ASN][1000 genomes]
rs34663462	0.83[ASN][1000 genomes]
rs36060902	0.83[ASN][1000 genomes]
rs61432525	0.85[ASN][1000 genomes]
rs7425514	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7593595	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7601398	0.83[ASN][1000 genomes]
rs969231	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs988289	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs988290	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875471	chr2:180448523-180469778	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180461400-180470400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:180463200-180467600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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