Variant report

Variant	rs34721549
Chromosome Location	chr2:180446474-180446475
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10179050	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11689295	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11695089	0.89[AFR][1000 genomes]
rs1515309	0.82[AFR][1000 genomes]
rs1515311	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17817559	0.80[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180442400-180446800	Enhancers	HepG2	liver
3	chr2:180445200-180450600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr2:180445600-180449400	Weak transcription	Right Atrium	heart
5	chr2:180445800-180449200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:180445800-180449200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:180445800-180449200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr2:180446000-180449200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:180446200-180446800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:180446200-180449200	Weak transcription	Fetal Heart	heart
11	chr2:180446400-180446600	Enhancers	Fetal Kidney	kidney
12	chr2:180446400-180449200	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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