Variant report

Variant	rs12373813
Chromosome Location	chr2:180550265-180550266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180545707..180548071-chr2:180550130..180552377,2	K562	blood:
2	chr2:180545732..180548071-chr2:180550130..180552936,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10178119	0.83[YRI][hapmap]
rs10180972	1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10183460	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10196293	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10201428	0.82[YRI][hapmap]
rs10497545	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13416735	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13432838	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399689	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1515288	1.00[CHB][hapmap]
rs1515292	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17770666	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17771213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17771279	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1877944	0.82[YRI][hapmap]
rs1877945	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap]
rs1996240	0.81[ASN][1000 genomes]
rs34008381	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35427104	0.81[ASN][1000 genomes]
rs4893879	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4893880	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56082800	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6721277	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743733	0.81[ASN][1000 genomes]
rs71405993	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932117	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs954649	0.81[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180544000-180557200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:180547400-180551600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180547600-180551200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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