Variant report

Variant	rs17770666
Chromosome Location	chr2:180531489-180531490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10174391	0.88[YRI][hapmap];0.93[AFR][1000 genomes]
rs10178119	0.91[YRI][hapmap];0.93[AFR][1000 genomes]
rs10180972	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[ASN][1000 genomes]
rs10183460	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10196293	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10201428	0.90[YRI][hapmap];0.93[AFR][1000 genomes]
rs10497545	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12373813	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13416735	0.93[ASN][1000 genomes]
rs13432838	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399689	1.00[YRI][hapmap]
rs1515288	1.00[CHB][hapmap]
rs1515292	1.00[YRI][hapmap]
rs17771213	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17771279	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17819812	0.87[CHD][hapmap]
rs1877944	0.91[YRI][hapmap];0.94[AFR][1000 genomes]
rs1877945	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1996240	0.81[ASN][1000 genomes]
rs34008381	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35427104	0.81[ASN][1000 genomes]
rs4893879	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4893880	0.83[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56082800	0.86[ASN][1000 genomes]
rs6721277	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743733	0.87[CHD][hapmap];0.81[ASN][1000 genomes]
rs71405993	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932117	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs952507	0.87[AFR][1000 genomes]
rs954649	0.87[CHD][hapmap];0.81[ASN][1000 genomes]
rs9789776	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961361	chr2:180530964-180534513	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17770666	PDE11A	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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