Variant report

Variant	rs11687033
Chromosome Location	chr2:180501055-180501056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11688746	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12612821	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13004211	0.85[CEU][hapmap];0.84[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13009601	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399686	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs1399687	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs1515274	0.87[CEU][hapmap];0.83[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1515277	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs1515278	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs1554103	0.85[CHB][hapmap]
rs16866871	0.88[CEU][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3106693	0.86[CHB][hapmap]
rs3106694	0.85[CHB][hapmap]
rs3112944	0.82[ASN][1000 genomes]
rs36017881	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4600606	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62176331	0.93[ASN][1000 genomes]
rs62176332	0.86[ASN][1000 genomes]
rs62176333	0.86[ASN][1000 genomes]
rs62176334	0.86[ASN][1000 genomes]
rs6741320	0.86[CHB][hapmap]
rs6741622	0.93[ASN][1000 genomes]
rs6756679	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs7581924	1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs9750247	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180495000-180502200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180500800-180501200	Enhancers	Fetal Heart	heart
3	chr2:180500800-180501600	Enhancers	Fetal Kidney	kidney
4	chr2:180500800-180501600	Flanking Active TSS	HepG2	liver
5	chr2:180500800-180502400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:180500800-180502400	Enhancers	Liver	Liver
7	chr2:180501000-180501400	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr2:180501000-180501400	Enhancers	Fetal Muscle Leg	muscle
9	chr2:180501000-180501400	Enhancers	Left Ventricle	heart
10	chr2:180501000-180502000	Enhancers	Ovary	ovary
11	chr2:180501000-180502400	Enhancers	Fetal Lung	lung
12	chr2:180501000-180502400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr2:180501000-180502400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr2:180501000-180502600	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links