Variant report

Variant	rs16867000
Chromosome Location	chr2:180665335-180665336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11892944	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11892974	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11894957	1.00[CEU][hapmap]
rs11900349	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16867017	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs16867020	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs57883199	1.00[EUR][1000 genomes]
rs59089951	1.00[EUR][1000 genomes]
rs6708281	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6730668	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73048570	1.00[EUR][1000 genomes]
rs73048573	1.00[EUR][1000 genomes]
rs73048581	1.00[EUR][1000 genomes]
rs7573549	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16867000	DNAJC5B	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180655600-180669600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180661600-180665400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:180661600-180665400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links