Variant report

Variant	rs16867065
Chromosome Location	chr2:9733013-9733014
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:9730159..9735372-chr2:9781969..9785269,4	K562	blood:
2	chr2:9729625..9733750-chr2:9734391..9737280,4	K562	blood:
3	chr2:9731942..9734354-chr2:9738501..9740007,2	K562	blood:
4	chr2:9732098..9735111-chr2:9769658..9771887,3	K562	blood:
5	chr2:9730968..9733407-chr2:9764631..9766138,2	MCF-7	breast:
6	chr2:9729553..9733750-chr2:9733992..9737827,4	K562	blood:
7	chr2:9732505..9736094-chr2:9769784..9772309,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134308	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16867064	1.00[EUR][1000 genomes]
rs17428551	1.00[EUR][1000 genomes]
rs73155523	1.00[EUR][1000 genomes]
rs7601942	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580915	chr2:9308148-9844178	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9696800-9767600	Weak transcription	Gastric	stomach
2	chr2:9706000-9733600	Weak transcription	Pancreas	Pancrea
3	chr2:9706400-9734200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:9715000-9735200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:9717600-9734800	Weak transcription	Spleen	Spleen
6	chr2:9719200-9747800	Weak transcription	Lung	lung
7	chr2:9719400-9733600	Weak transcription	Right Atrium	heart
8	chr2:9719400-9734800	Weak transcription	Aorta	Aorta
9	chr2:9720400-9734200	Weak transcription	Small Intestine	intestine
10	chr2:9720400-9734800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:9722800-9734600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr2:9723000-9733200	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:9723400-9733400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr2:9723400-9736200	Strong transcription	Dnd41	blood
15	chr2:9723600-9733400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr2:9723600-9734600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr2:9723600-9735400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:9723800-9739800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr2:9724200-9734600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr2:9725000-9733200	Strong transcription	K562	blood
21	chr2:9726000-9733600	Weak transcription	Esophagus	oesophagus
22	chr2:9726000-9734400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr2:9726000-9734400	Weak transcription	Colon Smooth Muscle	Colon
24	chr2:9726000-9734800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:9726000-9734800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr2:9726000-9739800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr2:9726400-9734600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr2:9728000-9733600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr2:9728200-9733800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr2:9728200-9734200	Weak transcription	Brain Substantia Nigra	brain
31	chr2:9728200-9734600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr2:9728200-9734600	Weak transcription	Brain Angular Gyrus	brain
33	chr2:9728400-9734600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr2:9728400-9739400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr2:9728600-9734800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr2:9728600-9739200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr2:9728800-9739200	Weak transcription	Colonic Mucosa	Colon
38	chr2:9729600-9734600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr2:9729600-9736800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr2:9729800-9738200	Weak transcription	Thymus	Thymus
41	chr2:9730000-9735200	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr2:9730400-9733400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr2:9730400-9733600	Weak transcription	Left Ventricle	heart
44	chr2:9730400-9733600	Weak transcription	HSMMtube	muscle
45	chr2:9730400-9733800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr2:9730400-9734200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr2:9730400-9734200	Weak transcription	Brain Hippocampus Middle	brain
48	chr2:9730400-9734400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr2:9730400-9734600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr2:9730400-9734800	Weak transcription	Right Ventricle	heart

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