Variant report

Variant	rs16867210
Chromosome Location	chr2:10017166-10017167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10013311..10015489-chr2:10017066..10019345,2	MCF-7	breast:
2	chr2:10016707..10019550-chr2:10020625..10023178,3	K562	blood:
3	chr2:10016465..10019089-chr2:10091206..10093388,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134317	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1022312	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11677649	0.81[AMR][1000 genomes]
rs11686239	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11691885	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13002884	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs1367385	0.81[YRI][hapmap]
rs1965411	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2052948	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2163337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2245344	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs2303914	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs35390016	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35466574	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35686192	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57046626	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6432041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6707700	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6742427	0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs6748720	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6759700	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013969	chr2:9888703-10023951	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv948591	chr2:9922257-10141191	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv873630	chr2:9953949-10030024	Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases
4	nsv873631	chr2:9975557-10059770	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
5	esv1843231	chr2:9979766-10141191	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv580960	chr2:9993451-10066694	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1011125	chr2:9996740-10293803	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
8	nsv873632	chr2:10000978-10045014	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16867210	TAF1B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9987200-10038400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr2:9993800-10079600	Weak transcription	Gastric	stomach
3	chr2:9995800-10038000	Weak transcription	Small Intestine	intestine
4	chr2:9998200-10024000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:9998200-10035600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:9998600-10024000	Weak transcription	Pancreas	Pancrea
7	chr2:9998800-10026000	Weak transcription	Fetal Brain Male	brain
8	chr2:9998800-10032200	Weak transcription	Fetal Heart	heart
9	chr2:9998800-10036400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr2:9999000-10017600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:9999000-10024000	Weak transcription	Colonic Mucosa	Colon
12	chr2:9999000-10024000	Weak transcription	Spleen	Spleen
13	chr2:9999000-10035800	Weak transcription	Brain Hippocampus Middle	brain
14	chr2:9999000-10035800	Weak transcription	Brain Substantia Nigra	brain
15	chr2:9999000-10037000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr2:9999000-10037200	Weak transcription	Colon Smooth Muscle	Colon
17	chr2:9999200-10017600	Weak transcription	Brain Anterior Caudate	brain
18	chr2:9999200-10036200	Weak transcription	Brain Angular Gyrus	brain
19	chr2:9999200-10036400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr2:9999200-10053800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr2:10001000-10018400	Weak transcription	NHLF	lung
22	chr2:10001600-10024000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:10001600-10024000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr2:10002200-10024200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:10007400-10020000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr2:10007400-10020400	Strong transcription	Primary T cells from cord blood	blood
27	chr2:10007800-10021000	Strong transcription	A549	lung
28	chr2:10007800-10026200	Strong transcription	Dnd41	blood
29	chr2:10008000-10026800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr2:10008200-10019600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr2:10008200-10020200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr2:10008200-10028000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr2:10008400-10026600	Weak transcription	GM12878-XiMat	blood
34	chr2:10008600-10020800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr2:10008600-10021000	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr2:10008800-10018400	Weak transcription	Psoas Muscle	Psoas
37	chr2:10008800-10021000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr2:10009000-10024000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr2:10009600-10020800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr2:10010200-10018600	Strong transcription	HepG2	liver
41	chr2:10010200-10021000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr2:10010200-10021200	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr2:10010400-10020200	Strong transcription	Fetal Intestine Large	intestine
44	chr2:10010800-10019400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr2:10010800-10021000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr2:10011200-10018000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr2:10011600-10020200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr2:10011600-10020400	Strong transcription	NH-A	brain
49	chr2:10011600-10022200	Strong transcription	Fetal Thymus	thymus
50	chr2:10011800-10020800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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