Variant report

Variant	rs16867531
Chromosome Location	chr6:70138140-70138141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11961580	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12196517	1.00[JPT][hapmap]
rs13201074	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13204189	1.00[JPT][hapmap]
rs1328729	1.00[ASN][1000 genomes]
rs1987276	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34521235	1.00[ASN][1000 genomes]
rs35667279	1.00[ASN][1000 genomes]
rs6916553	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6922588	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6926348	1.00[JPT][hapmap]
rs7748687	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70136600-70138400	Enhancers	Fetal Brain Female	brain
2	chr6:70138000-70138200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:70138000-70138400	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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