Variant report

Variant	rs16867844
Chromosome Location	chr4:27922256-27922257
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10015871	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4692261	0.89[EUR][1000 genomes]
rs7442293	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013877	chr4:27539626-28051576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv4282	chr4:27914655-27959474	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27917000-27923600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:27918600-27922800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:27918800-27922600	Weak transcription	Fetal Lung	lung
4	chr4:27919800-27922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:27921000-27926000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr4:27921400-27929600	Weak transcription	Brain Substantia Nigra	brain
7	chr4:27922200-27922400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:27922200-27922400	Enhancers	Brain Hippocampus Middle	brain
9	chr4:27922200-27922400	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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