Variant report

Variant	rs7442293
Chromosome Location	chr4:27923085-27923086
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10015871	0.88[EUR][1000 genomes]
rs10016121	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10021732	0.88[AMR][1000 genomes]
rs16867844	0.88[EUR][1000 genomes]
rs1990546	0.93[AMR][1000 genomes]
rs1990547	0.93[AMR][1000 genomes]
rs2309666	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4692044	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4692261	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013877	chr4:27539626-28051576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv4282	chr4:27914655-27959474	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27917000-27923600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:27921000-27926000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr4:27921400-27929600	Weak transcription	Brain Substantia Nigra	brain
4	chr4:27922600-27923200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr4:27922600-27923800	Enhancers	Fetal Lung	lung
6	chr4:27922800-27923200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:27922800-27923200	Enhancers	Right Atrium	heart
8	chr4:27922800-27923400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:27922800-27923400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:27922800-27923400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:27922800-27923600	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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