Variant report

Variant	rs16868295
Chromosome Location	chr6:70566376-70566377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13194248	0.86[AMR][1000 genomes]
rs13197316	0.85[ASN][1000 genomes]
rs13200171	0.89[MEX][hapmap];0.86[AMR][1000 genomes]
rs13209483	0.95[ASN][1000 genomes]
rs13217925	0.89[MEX][hapmap];0.86[AMR][1000 genomes]
rs1572898	0.81[GIH][hapmap];0.95[MEX][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17688591	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34516452	0.89[AMR][1000 genomes]
rs34791579	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs36034975	0.95[ASN][1000 genomes]
rs36090294	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4492160	0.86[AMR][1000 genomes]
rs62420104	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62420119	0.86[AMR][1000 genomes]
rs6914372	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6919210	0.86[AMR][1000 genomes]
rs6940876	0.89[MEX][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16868295	EEF1A1	cis	parietal	SCAN
rs16868295	C6orf57	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70565800-70566400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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