Variant report

Variant	rs62420104
Chromosome Location	chr6:70571887-70571888
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10498870	0.91[ASN][1000 genomes]
rs13194248	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13200171	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13208359	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13217925	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1572898	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16868295	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17688591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34347922	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34516452	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34791579	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36090294	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4492160	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56227699	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62420119	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6905176	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6914372	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6919210	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6940876	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70570200-70575000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:70570200-70576200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:70570800-70572200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:70571200-70573200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:70571600-70572200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:70571600-70572200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:70571600-70572400	Enhancers	NHEK	skin
8	chr6:70571800-70572200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:70571800-70572200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:70571800-70572200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:70571800-70572200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:70571800-70572200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:70571800-70572200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:70571800-70572200	Enhancers	HMEC	breast
15	chr6:70571800-70573400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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