Variant report

Variant	rs16868370
Chromosome Location	chr6:70645971-70645972
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10455701	1.00[AMR][1000 genomes]
rs12204820	1.00[AMR][1000 genomes]
rs12210952	1.00[AMR][1000 genomes]
rs16868379	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61350693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932082	1.00[AMR][1000 genomes]
rs6935725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73482169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73484243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73484248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73484262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7349873	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv886141	chr6:70590638-70694162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv463151	chr6:70625166-70694162	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv603636	chr6:70625166-70694162	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70638200-70648400	Weak transcription	GM12878-XiMat	blood
2	chr6:70642200-70646600	Enhancers	Fetal Heart	heart
3	chr6:70642200-70653800	Strong transcription	Primary B cells from peripheral blood	blood
4	chr6:70642800-70649800	Strong transcription	Primary B cells from cord blood	blood
5	chr6:70643800-70646200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:70643800-70646400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:70645200-70648000	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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