Variant report

Variant	rs6935725
Chromosome Location	chr6:70610766-70610767
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10455701	1.00[AMR][1000 genomes]
rs12204820	1.00[AMR][1000 genomes]
rs12210952	1.00[AMR][1000 genomes]
rs16868370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868379	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs61350693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932082	1.00[AMR][1000 genomes]
rs73482169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73484243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73484248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73484262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7349873	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv886141	chr6:70590638-70694162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70604400-70617800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:70605200-70610800	Weak transcription	Primary B cells from cord blood	blood
3	chr6:70605200-70616000	Weak transcription	Fetal Stomach	stomach
4	chr6:70605600-70627800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:70606000-70613400	Weak transcription	GM12878-XiMat	blood
6	chr6:70609800-70616400	Strong transcription	Primary B cells from peripheral blood	blood
7	chr6:70609800-70616800	Weak transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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