Variant report

Variant	rs16868494
Chromosome Location	chr8:102844590-102844591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59368707..59371111-chr8:102843396..102846308,2	MCF-7	breast:
2	chr8:102843199..102845818-chr8:102888680..102891293,2	MCF-7	breast:
3	chr8:102841778..102844657-chr8:102844886..102847440,3	K562	blood:
4	chr8:102842176..102845083-chr8:102849432..102850991,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16868664	1.00[AMR][1000 genomes]
rs6982111	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs767178	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7820619	1.00[AMR][1000 genomes]
rs7826612	0.83[AFR][1000 genomes]
rs7831243	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv518162	chr8:102841031-102893626	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv523850	chr8:102841031-102893626	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102835000-102852000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:102838600-102848400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:102840800-102845200	Weak transcription	Adipose Nuclei	Adipose
5	chr8:102842200-102851000	Weak transcription	Fetal Kidney	kidney
6	chr8:102843000-102845200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:102843000-102845400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:102843400-102846200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:102843600-102845600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:102843800-102844600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:102843800-102844600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:102843800-102844600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:102843800-102844600	Enhancers	Aorta	Aorta
14	chr8:102843800-102844600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr8:102843800-102844600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr8:102843800-102844600	Enhancers	Right Ventricle	heart
17	chr8:102843800-102844600	Enhancers	NHDF-Ad	bronchial
18	chr8:102843800-102844600	Enhancers	Osteobl	bone
19	chr8:102843800-102844800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:102843800-102844800	Enhancers	Brain Substantia Nigra	brain
21	chr8:102843800-102844800	Enhancers	Ovary	ovary
22	chr8:102843800-102844800	Enhancers	Pancreas	Pancrea
23	chr8:102843800-102844800	Enhancers	Right Atrium	heart
24	chr8:102843800-102845000	Enhancers	Brain Hippocampus Middle	brain
25	chr8:102843800-102845200	Enhancers	Brain Cingulate Gyrus	brain
26	chr8:102843800-102845200	Enhancers	Fetal Muscle Trunk	muscle
27	chr8:102843800-102845400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:102843800-102845400	Enhancers	Left Ventricle	heart
29	chr8:102843800-102845400	Enhancers	Rectal Smooth Muscle	rectum
30	chr8:102843800-102845400	Enhancers	NH-A	brain
31	chr8:102843800-102846000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr8:102843800-102846800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr8:102843800-102848000	Enhancers	HMEC	breast
34	chr8:102844000-102844600	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr8:102844000-102844600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr8:102844000-102844600	Enhancers	Brain Angular Gyrus	brain
37	chr8:102844000-102844600	Enhancers	Lung	lung
38	chr8:102844000-102844800	Enhancers	Brain Anterior Caudate	brain
39	chr8:102844000-102845400	Enhancers	Fetal Heart	heart
40	chr8:102844000-102845600	Enhancers	Colon Smooth Muscle	Colon
41	chr8:102844000-102846400	Enhancers	Stomach Smooth Muscle	stomach
42	chr8:102844000-102846800	Enhancers	Fetal Muscle Leg	muscle
43	chr8:102844200-102844800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr8:102844200-102845200	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr8:102844200-102845200	Enhancers	Stomach Mucosa	stomach
46	chr8:102844200-102845400	Enhancers	HSMMtube	muscle
47	chr8:102844200-102845400	Enhancers	NHEK	skin
48	chr8:102844200-102847200	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr8:102844200-102847400	Weak transcription	Esophagus	oesophagus
50	chr8:102844400-102845800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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