Variant report

Variant	rs767178
Chromosome Location	chr8:102864658-102864659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10505013	0.82[YRI][hapmap]
rs16868494	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868664	1.00[AMR][1000 genomes]
rs6982111	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7820619	1.00[AMR][1000 genomes]
rs7826612	0.83[AFR][1000 genomes]
rs7831243	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv518162	chr8:102841031-102893626	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv523850	chr8:102841031-102893626	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102846800-102866400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:102854800-102866200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:102859600-102866200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:102862400-102869600	Weak transcription	Left Ventricle	heart
6	chr8:102862600-102865800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:102862600-102866000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:102862600-102866400	Weak transcription	NHEK	skin
9	chr8:102862600-102866600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:102862600-102867000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr8:102862600-102867600	Weak transcription	Right Ventricle	heart
12	chr8:102862600-102868600	Weak transcription	Aorta	Aorta
13	chr8:102862600-102868600	Weak transcription	Ovary	ovary
14	chr8:102862800-102876000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:102863000-102865800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:102863000-102865800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr8:102864000-102865000	Enhancers	GM12878-XiMat	blood
18	chr8:102864000-102866400	Enhancers	HSMMtube	muscle
19	chr8:102864000-102867600	Enhancers	Fetal Muscle Leg	muscle
20	chr8:102864200-102865000	Enhancers	Psoas Muscle	Psoas
21	chr8:102864600-102864800	Flanking Active TSS	Fetal Muscle Trunk	muscle
22	chr8:102864600-102864800	Enhancers	Lung	lung
23	chr8:102864600-102865000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:102864600-102865000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr8:102864600-102867400	Enhancers	Skeletal Muscle Female	skeletal muscle

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