Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16868686	0.92[ASN][1000 genomes]
rs16868779	0.92[ASN][1000 genomes]
rs17508269	0.87[EUR][1000 genomes]
rs17567456	0.87[EUR][1000 genomes]
rs17569535	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61790552	0.84[ASN][1000 genomes]
rs61790553	0.84[ASN][1000 genomes]
rs61790555	0.84[ASN][1000 genomes]
rs62295088	0.92[ASN][1000 genomes]
rs62295089	0.92[ASN][1000 genomes]
rs62295092	0.92[ASN][1000 genomes]
rs62295093	0.92[ASN][1000 genomes]
rs62295094	0.92[ASN][1000 genomes]
rs62295097	0.84[ASN][1000 genomes]
rs62295106	0.84[ASN][1000 genomes]
rs62295149	0.84[ASN][1000 genomes]
rs62295150	0.84[ASN][1000 genomes]
rs62295152	0.84[ASN][1000 genomes]
rs62295155	0.84[ASN][1000 genomes]
rs62295158	0.84[ASN][1000 genomes]
rs62296084	0.92[ASN][1000 genomes]
rs62296260	0.84[ASN][1000 genomes]
rs62296267	0.84[ASN][1000 genomes]
rs62296884	0.92[ASN][1000 genomes]
rs62296886	0.92[ASN][1000 genomes]
rs62296888	0.92[ASN][1000 genomes]
rs7673978	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv829873	chr4:19582263-19742515	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv829874	chr4:19635213-19781102	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19685200-19695000	Weak transcription	Fetal Stomach	stomach
2	chr4:19686200-19695800	Weak transcription	Fetal Lung	lung
3	chr4:19686600-19695800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:19687800-19692000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:19688400-19694200	Weak transcription	Dnd41	blood
6	chr4:19690600-19691600	Enhancers	NHDF-Ad	bronchial
7	chr4:19691000-19691800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:19691000-19692000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:19691000-19692000	Enhancers	NH-A	brain
10	chr4:19691200-19691600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:19691200-19691600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:19691200-19691600	Active TSS	Osteobl	bone
13	chr4:19691200-19691800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:19691400-19691800	Enhancers	HSMMtube	muscle
15	chr4:19691400-19692200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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