Variant report

Variant	rs61790553
Chromosome Location	chr4:19805683-19805684
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10009708	0.81[EUR][1000 genomes]
rs10516334	0.81[EUR][1000 genomes]
rs10516337	0.81[EUR][1000 genomes]
rs11939846	0.81[EUR][1000 genomes]
rs13435279	0.81[EUR][1000 genomes]
rs16868686	0.92[ASN][1000 genomes]
rs16868702	0.84[ASN][1000 genomes]
rs16868774	0.81[EUR][1000 genomes]
rs16868779	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17569535	0.92[ASN][1000 genomes]
rs28476561	0.81[EUR][1000 genomes]
rs28484795	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28523873	0.81[EUR][1000 genomes]
rs28548641	0.81[EUR][1000 genomes]
rs28649741	0.81[EUR][1000 genomes]
rs3935063	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3935613	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4511994	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61790552	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61790555	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295087	0.81[EUR][1000 genomes]
rs62295088	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62295089	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62295092	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62295093	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62295094	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62295096	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62295097	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295103	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62295105	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62295106	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295109	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62295136	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62295149	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295150	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295152	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295155	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295156	0.93[EUR][1000 genomes]
rs62295158	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295159	0.92[EUR][1000 genomes]
rs62296084	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62296260	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62296267	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62296884	0.92[ASN][1000 genomes]
rs62296886	0.92[ASN][1000 genomes]
rs62296888	0.92[ASN][1000 genomes]
rs7673978	0.92[ASN][1000 genomes]
rs9291405	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1009938	chr4:19787648-19848997	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1001635	chr4:19787648-19854388	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2752044	chr4:19788263-20126804	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19805600-19808200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:19805600-19809800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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