Variant report

Variant	rs3935063
Chromosome Location	chr4:19750919-19750920
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10009708	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10516334	0.92[EUR][1000 genomes]
rs10516337	0.92[EUR][1000 genomes]
rs11939841	1.00[JPT][hapmap]
rs11939846	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13435279	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16868634	0.87[EUR][1000 genomes]
rs16868686	0.89[EUR][1000 genomes]
rs16868700	0.89[EUR][1000 genomes]
rs16868774	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16868777	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16868779	0.99[EUR][1000 genomes]
rs28476561	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28484795	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28520510	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28523873	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28548641	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28649741	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3935613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4511994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61356602	0.87[EUR][1000 genomes]
rs61790552	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61790553	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61790555	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62295087	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62295088	0.92[EUR][1000 genomes]
rs62295089	0.92[EUR][1000 genomes]
rs62295092	0.92[EUR][1000 genomes]
rs62295093	0.99[EUR][1000 genomes]
rs62295094	0.96[EUR][1000 genomes]
rs62295096	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295097	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62295103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295106	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62295109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62295149	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62295150	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62295152	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62295155	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62295156	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62295158	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62295159	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62296084	0.92[EUR][1000 genomes]
rs62296260	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62296267	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62296884	0.89[EUR][1000 genomes]
rs62296886	0.87[EUR][1000 genomes]
rs62296888	0.89[EUR][1000 genomes]
rs62299872	0.84[EUR][1000 genomes]
rs62299873	0.87[EUR][1000 genomes]
rs6823430	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7659519	0.89[EUR][1000 genomes]
rs7673978	0.89[EUR][1000 genomes]
rs9291405	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv829874	chr4:19635213-19781102	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19740800-19753600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:19749400-19751800	Enhancers	Fetal Lung	lung
3	chr4:19749800-19752400	Enhancers	Fetal Kidney	kidney
4	chr4:19750000-19751200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:19750000-19751200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:19750000-19751200	Enhancers	Osteobl	bone
7	chr4:19750200-19751000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:19750200-19751200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:19750400-19751000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:19750400-19751000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:19750400-19751200	Enhancers	Fetal Stomach	stomach
12	chr4:19750400-19751600	Enhancers	Adipose Nuclei	Adipose
13	chr4:19750400-19751600	Enhancers	NHLF	lung
14	chr4:19750600-19751000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:19750600-19752600	Enhancers	NHDF-Ad	bronchial
16	chr4:19750800-19752400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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