Variant report

Variant	rs62299872
Chromosome Location	chr4:19605507-19605508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10009708	0.91[EUR][1000 genomes]
rs10009772	0.81[ASN][1000 genomes]
rs10012861	0.81[ASN][1000 genomes]
rs10028337	0.81[ASN][1000 genomes]
rs10032188	0.81[ASN][1000 genomes]
rs10516334	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10516337	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11933898	0.87[ASN][1000 genomes]
rs11939846	0.91[EUR][1000 genomes]
rs11941599	0.81[ASN][1000 genomes]
rs11944084	0.82[ASN][1000 genomes]
rs11945412	0.81[ASN][1000 genomes]
rs13435279	0.91[EUR][1000 genomes]
rs16868608	0.89[ASN][1000 genomes]
rs16868634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16868686	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16868700	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16868774	0.91[EUR][1000 genomes]
rs16868777	0.89[EUR][1000 genomes]
rs16868779	0.85[EUR][1000 genomes]
rs17509863	0.80[ASN][1000 genomes]
rs28406392	0.81[ASN][1000 genomes]
rs28476561	0.91[EUR][1000 genomes]
rs28484795	0.84[EUR][1000 genomes]
rs28505527	0.81[ASN][1000 genomes]
rs28520510	0.87[EUR][1000 genomes]
rs28523873	0.91[EUR][1000 genomes]
rs28548641	0.91[EUR][1000 genomes]
rs28649741	0.91[EUR][1000 genomes]
rs28649908	0.81[ASN][1000 genomes]
rs28662302	0.81[ASN][1000 genomes]
rs28713269	0.81[ASN][1000 genomes]
rs3935063	0.84[EUR][1000 genomes]
rs3935613	0.84[EUR][1000 genomes]
rs4511994	0.84[EUR][1000 genomes]
rs4541506	0.81[ASN][1000 genomes]
rs4637398	0.81[ASN][1000 genomes]
rs59810064	0.81[ASN][1000 genomes]
rs60069867	0.81[ASN][1000 genomes]
rs60284344	0.89[ASN][1000 genomes]
rs61356602	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61359326	0.89[ASN][1000 genomes]
rs62295087	0.91[EUR][1000 genomes]
rs62295088	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62295089	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62295092	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62295093	0.85[EUR][1000 genomes]
rs62295094	0.82[EUR][1000 genomes]
rs62295096	0.84[EUR][1000 genomes]
rs62295097	0.84[EUR][1000 genomes]
rs62295103	0.84[EUR][1000 genomes]
rs62295105	0.84[EUR][1000 genomes]
rs62295106	0.84[EUR][1000 genomes]
rs62295109	0.84[EUR][1000 genomes]
rs62295136	0.84[EUR][1000 genomes]
rs62295149	0.84[EUR][1000 genomes]
rs62295150	0.84[EUR][1000 genomes]
rs62296084	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62296707	0.81[ASN][1000 genomes]
rs62296709	0.81[ASN][1000 genomes]
rs62296884	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62296886	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62296888	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62299873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6823430	0.89[EUR][1000 genomes]
rs6837423	0.81[ASN][1000 genomes]
rs73097402	0.81[ASN][1000 genomes]
rs73099604	0.81[ASN][1000 genomes]
rs73099613	0.81[ASN][1000 genomes]
rs73099658	0.81[ASN][1000 genomes]
rs73099698	0.89[ASN][1000 genomes]
rs73101116	0.89[ASN][1000 genomes]
rs73101119	0.89[ASN][1000 genomes]
rs7659519	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7673978	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9291405	0.91[EUR][1000 genomes]
rs9990468	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv829873	chr4:19582263-19742515	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1001485	chr4:19585423-19655316	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19604800-19607200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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