Variant report

Variant	rs10516337
Chromosome Location	chr4:19691771-19691772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10009708	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10516334	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11939846	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13435279	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868634	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16868686	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16868700	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868774	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868777	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16868779	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17509863	0.82[ASN][1000 genomes]
rs28476561	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28484795	0.92[EUR][1000 genomes]
rs28520510	0.93[EUR][1000 genomes]
rs28523873	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28548641	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28649741	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3935063	0.92[EUR][1000 genomes]
rs3935613	0.92[EUR][1000 genomes]
rs4511994	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs61356602	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61790553	0.81[EUR][1000 genomes]
rs62295087	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62295088	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62295089	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62295092	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62295093	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62295094	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62295096	0.92[EUR][1000 genomes]
rs62295097	0.92[EUR][1000 genomes]
rs62295103	0.92[EUR][1000 genomes]
rs62295105	0.92[EUR][1000 genomes]
rs62295106	0.92[EUR][1000 genomes]
rs62295109	0.92[EUR][1000 genomes]
rs62295136	0.92[EUR][1000 genomes]
rs62295149	0.92[EUR][1000 genomes]
rs62295150	0.92[EUR][1000 genomes]
rs62295152	0.87[EUR][1000 genomes]
rs62295155	0.87[EUR][1000 genomes]
rs62295156	0.87[EUR][1000 genomes]
rs62295158	0.86[EUR][1000 genomes]
rs62295159	0.86[EUR][1000 genomes]
rs62296084	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296260	0.84[EUR][1000 genomes]
rs62296267	0.86[EUR][1000 genomes]
rs62296884	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62296886	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296888	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62299872	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62299873	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6823430	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7659519	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7673978	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9291405	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv829873	chr4:19582263-19742515	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv829874	chr4:19635213-19781102	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19685200-19695000	Weak transcription	Fetal Stomach	stomach
2	chr4:19686200-19695800	Weak transcription	Fetal Lung	lung
3	chr4:19686600-19695800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:19687800-19692000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:19688400-19694200	Weak transcription	Dnd41	blood
6	chr4:19691000-19691800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:19691000-19692000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:19691000-19692000	Enhancers	NH-A	brain
9	chr4:19691200-19691800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:19691400-19691800	Enhancers	HSMMtube	muscle
11	chr4:19691400-19692200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:19691600-19691800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:19691600-19692000	Enhancers	Osteobl	bone
14	chr4:19691600-19694000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:19691600-19694000	Weak transcription	NHDF-Ad	bronchial

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