Variant report

Variant	rs28406392
Chromosome Location	chr4:19478821-19478822
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10003702	0.89[ASN][1000 genomes]
rs10006103	0.96[ASN][1000 genomes]
rs10006299	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10009772	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10012861	1.00[ASN][1000 genomes]
rs10015294	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10025775	0.96[ASN][1000 genomes]
rs10028337	0.99[ASN][1000 genomes]
rs10031579	0.89[ASN][1000 genomes]
rs10032188	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10032629	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10034324	0.96[ASN][1000 genomes]
rs10212992	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10222803	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10222907	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10222971	0.95[ASN][1000 genomes]
rs10223045	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10470799	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11933898	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11941599	1.00[ASN][1000 genomes]
rs11941815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11943058	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11943773	0.86[ASN][1000 genomes]
rs11944084	0.85[ASN][1000 genomes]
rs11945412	1.00[ASN][1000 genomes]
rs11946126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13434929	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1388145	0.87[ASN][1000 genomes]
rs1388148	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16868608	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16868634	0.82[ASN][1000 genomes]
rs28392619	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28445313	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28468581	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28505527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28506946	0.97[ASN][1000 genomes]
rs28584356	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28612466	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28625215	0.96[ASN][1000 genomes]
rs28649908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654609	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28662302	1.00[ASN][1000 genomes]
rs28675174	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28698715	0.96[ASN][1000 genomes]
rs28713269	1.00[ASN][1000 genomes]
rs28749929	0.96[ASN][1000 genomes]
rs28809022	0.92[ASN][1000 genomes]
rs28834385	0.96[ASN][1000 genomes]
rs28849735	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28861473	0.96[ASN][1000 genomes]
rs4380521	0.90[ASN][1000 genomes]
rs4472135	0.90[ASN][1000 genomes]
rs4541506	1.00[ASN][1000 genomes]
rs4572879	0.90[ASN][1000 genomes]
rs4637398	1.00[ASN][1000 genomes]
rs59192349	0.87[ASN][1000 genomes]
rs59810064	1.00[ASN][1000 genomes]
rs60069867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60284344	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61359326	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62296707	1.00[ASN][1000 genomes]
rs62296709	1.00[ASN][1000 genomes]
rs62298737	0.92[ASN][1000 genomes]
rs62299872	0.81[ASN][1000 genomes]
rs6837423	1.00[ASN][1000 genomes]
rs73092965	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73092970	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73092977	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73092981	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73092983	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73092984	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73097402	1.00[ASN][1000 genomes]
rs73099604	1.00[ASN][1000 genomes]
rs73099613	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73099658	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73099698	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73101116	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73101119	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73110725	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73110735	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73110746	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9291404	0.90[ASN][1000 genomes]
rs982066	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs982067	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9990468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994751	0.90[ASN][1000 genomes]
rs9998589	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv878734	chr4:19474680-19598710	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19475200-19480600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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