Variant report

Variant	rs73110725
Chromosome Location	chr4:19364167-19364168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10006299	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10009772	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10015294	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10032188	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10032629	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10212992	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10222803	0.96[EUR][1000 genomes]
rs10222907	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10223045	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10470799	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11941815	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11943058	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11946126	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13434929	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1388148	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28392619	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28406392	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28445313	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28468581	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28505527	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28584356	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28612466	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28649908	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28654609	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28675174	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28849735	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60069867	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73092965	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73092970	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73092977	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73092981	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73092983	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73092984	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73099613	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73099658	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73108776	1.00[ASN][1000 genomes]
rs73108783	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73108784	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73108791	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73110735	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73110746	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs982066	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs982067	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9990468	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010078	chr4:19079379-19386522	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv829872	chr4:19268282-19432872	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19351400-19367400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links